Forecasting time-dependent radiation induced lymphocyte depletion in a clinical trial on early-stage lung cancer
C. Nguyen, J. Chen, J. Larner, J. Colen, and K. Wijesooriya
International Journal of Radiation Oncology - Biology - Physics, 2026
Publications
You can also find my articles on my Google Scholar profile.
Training set augmentation and biology-aware harmonization improve radiomic models for lung cancer prediction in indeterminate nodules
C. Huchthausen, M. Shi, G.L.A. de Sousa, J. Larner, E. Janowski, J. Colen, and K. Wijesooriya
Scientific Reports, 2026
Learning to model pediatric asthma exacerbation from multiple risk factors: a case study in coastal Virginia
J. Colen, E. Werner, M. Golbazi, H. Richter, D. McSpadden, A. Quinn, J. Santos, M.J. Darling, and M.M. Gleason
In Review, 2026
Explainable physics-based constraints on reinforcement learning for accelerator optimization
J. Colen, M. Schram, K. Rajput, and A. Kasparian
Machine Learning: Science and Technology, 2026
Sociohydrodynamics: data-driven modelling of social behavior
D. Seara, J. Colen, M. Fruchart, Y. Avni, D. Martin, and V. Vitelli
Proceedings of the National Academy of Sciences, 2025
Harnessing the Power of Gradient-Based Simulations for Multi-Objective Optimization in Particle Accelerators
K. Rajput, M. Schram, A. Edelen, J. Colen, A. Kasparian, R. Roussel, A. Carpenter, H. Zhang, and J. Benesch
Machine Learning: Science and Technology, 2025
Interpreting neural operators: how nonlinear waves propagate in non-reciprocal solids
J. Colen*, A. Poncet*, D. Bartolo, and V. Vitelli
Physical Review Letters, 2024
Predicting radiation-induced immune suppression in lung cancer patients treated with stereotactic body radiation therapy
J. Colen*, C. Nguyen*, S.W. Liyanage, E. Aliotta, J. Chen, C. Alonso, K. Romano, S. Peach, T. Showalter, P. Read, J. Larner, and K. Wijesooriya
Medical Physics, 2024
Motor crosslinking augments elasticity in active nematics
S.A. Redford, J. Colen, J.L. Shivers, S. Zemsky, M. Molaei, C. Floyd, P.V. Ruijgrok, V. Vitelli, Z. Bryant, A.R. Dinner, and M.L. Gardel
Soft Matter, 2024
Machine learning interpretable models of cell mechanics from protein images
M. Schmitt*, J. Colen*, S. Sala, J. Devany, S. Seetharaman, A. Caillier, M.L. Gardel, P.W. Oakes, and V. Vitelli
Cell, 2024
Learning a conserved mechanism for early neuroectoderm morphogenesis
M. Lefebvre*, J. Colen*, N. Claussen*, F. Brauns, M. Raich, N.P. Mitchell, M. Fruchart, V. Vitelli, and S. Streichan
In Revision, 2023
Negative group velocity and Kelvin-like wake pattern
E. Kolomeisky, J. Colen, and J.P. Straley
Physical Review B, 2022
PINT: A modern software package for pulsar timing
J. Luo, S. Ransom, P. Demorest, P.S. Ray, A. Archibald, M. Kerr, R.J. Jennings, M. Bachetti, R. van Haasteren, C.A. Champagne, J. Colen, C. Phillips, J. Zimmerman, K. Stovall, M.T. Lam, and F.A. Jenet
The Astrophysical Journal, 2021
Machine learning active-nematic hydrodynamics
J. Colen*, M. Han*, R. Zhang, S.A. Redford, L.M. Lenna, L. Morgan, P.V. Ruijgrok, R. Adkins, Z. Bryant, Z. Dogic, M.L. Gardel, J. J. de Pablo, and V. Vitelli
Proceedings of the National Academy of Sciences, 2021
Kelvin-Froude wake patterns of a traveling pressure disturbance
J. Colen and E. Kolomeisky
European Journal of Mechanics B/Fluids, 2021
PINT: High-precision pulsar timing analysis package
J. Luo, S. Random, P. Demorest, R. van Haasteren, P.S. Ray, K. Stovall, M. Bachetti, A. Archibald, M. Kerr, J. Colen, and F. Jenet
Astrophysics Source Code Library, 2019
Elastic and electronic tuning of magnetoresistance in MoTe2
J. Yang, J. Colen, J. Liu, M.C. Nguyen, G.W. Chern, and D. Louca
Science Advances, 2017