Harnessing the Power of Gradient-Based Simulations for Multi-Objective Optimization in Particle Accelerators
Kishansingh Rajput, Malachi Schram, Auralee Edelen, Jonathan Colen, Armen Kasparian, Ryan Roussel, Adam Carpenter, He Zhang, and Jay Benesch
In Review (2024) arXiv:2411.04817
Harmonization to preserve biological variability in radiomics for early detection of lung cancer
Claire Huchthausen, Menglin Shi, Gabriel L.A. de Sousa, Jonathan Colen, Emery Shelley, James Larner, and Krishni Wijesooriya
In Review (2024)
Interpreting neural operators: how nonlinear waves propagate in non-reciprocal solids Jonathan Colen*, Alexis Poncet*, Denis Bartolo, and Vincenzo Vitelli Physical Review Letters (2024).
arXiv:2404.12918
Predicting radiation-induced immune suppression in lung cancer patients treated with stereotactic body radiation therapy Jonathan Colen*, Cam Nguyen*, Seth W. Liyanage, Eric Aliotta, Joe Chen, Clayton E. Alonso, Kara Romano, Sean Peach, Timothy Showalter, Paul Read, James Larner, and Krishni Wijesooriya Medical Physics (2024)
Machine learning interpretable models of cell mechanics from protein images
Matthew S. Schmitt*, Jonathan Colen*, Stefano Sala, John Devany, Shailaja Seetharaman, Alexia Caillier, Margaret L. Gardel, Patrick W. Oakes, Vincenzo Vitelli Cell (2024)
arXiv:2303:00176
Motor crosslinking augments elasticity in active nematics
Steven A. Redford, Jonathan Colen, Jordan L. Shivers, Sasha Zemsky, Mehdi Molaei, Carlos Floyd, Paul V. Ruijgrok, Vincenzo Vitelli, Zev Bryant, Aaron R. Dinner, Margaret L. Gardel Soft Matter (2024)
arXiv:2308:16831
Sociohydrodynamics: data-driven modelling of social behavior
Danny Seara, Jonathan Colen, Michel Fruchart, Yael Avni, David Martin, and Vincenzo Vitelli
In Revision (2023) arXiv:2312.17627
Learning a conserved mechanism for early neuroectoderm morphogenesis
Matthew Lefebvre*, Jonathan Colen*, Nikolas Claussen*, Fridtjof Brauns, Marion Raich, Noah P. Mitchell, Michel Fruchart, Vincenzo Vitelli, and Sebastian Streichan
In Revision (2023) bioRxivarXiv:2405.18382
Negative group velocity and Kelvin-like wake pattern
Eugene Kolomeisky, Jonathan Colen, Joseph P. Straley Physical Review B (2022)
arXiv:2106.00821
PINT: A modern software package for pulsar timing
Jing Luo, Scott Ransom, Paul Demorest, Paul S. Ray, Anne Archibald, Matthew Kerr, Ross. J. Jennings, Matteo Bachetti, Rutger van Haasteren, Chloe A. Champagne, Jonathan Colen, Camryn Phillips, Josef Zimmerman, Kevin Stovall, Michael T. Lam, Fredrick A. Jenet The Astrophysical Journal (2021)
arXiv:2012.00074
Machine learning active-nematic hydrodynamics Jonathan Colen*, Ming Han*, Rui Zhang, Steven A. Redford, Linnea M. Lemma, Link Morgan, Paul V. Ruijgrok, Raymond Adkins, Zev Bryant, Zvonimir Dogic, Margaret L. Gardel, Juan J. de Pablo, Vincenzo Vitelli Proceedings of the National Academy of Sciences (2021)
arXiv:2006.13203
PINT: High-precision pulsar timing analysis package
Jing Luo, Scott Ransom, Paul Demorest, Rutger van Haasteren, Paul S. Ray, Kevin Stovall, Matteo Bachetti, Anne Archibald, Matthew Kerr, Jonathan Colen, Fredrick Jenet Astrophysics Source Code Library (2019)
Elastic and electronic tuning of magnetoresistance in MoTe2
Junjie Yang, Jonathan Colen, Jun Liu, Manh Cuong Nguyen, Gia-Wei Chern, and Despina Louca Science Advances (2017)
arXiv:1710.02589