Publications

Explainable physics-based constraints on reinforcement learning for accelerator controls

J. Colen, M. Schram, K. Rajput, and A. Kasparian
In Review at Expert Systems with Applications, 2025

Evaluation of radiomic feature harmonization techniques for benign and malignant pulmonary nodules

C. Huchthausen, M. Shi, G.L.A. de Sousa, J. Colen, E. Shelley, J. Larner, and K. Wijesooriya
In Revision at Medical Physics, 2024

Harnessing the Power of Gradient-Based Simulations for Multi-Objective Optimization in Particle Accelerators

K. Rajput, M. Schram, A. Edelen, J. Colen, A. Kasparian, R. Roussel, A. Carpenter, H. Zhang, and J. Benesch
In Press at Machine Learning: Science and Technology, 2024

Sociohydrodynamics: data-driven modelling of social behavior

D. Seara, J. Colen, M. Fruchart, Y. Avni, D. Martin, and V. Vitelli
In Revision at PNAS, 2023

Learning a conserved mechanism for early neuroectoderm morphogenesis

M. Lefebvre*, J. Colen*, N. Claussen*, F. Brauns, M. Raich, N.P. Mitchell, M. Fruchart, V. Vitelli, and S. Streichan
In Revision at Developmental Cell, 2023

Featured in PreLights

Interpreting neural operators: how nonlinear waves propagate in non-reciprocal solids

J. Colen*, A. Poncet*, D. Bartolo, and V. Vitelli
Physical Review Letters, 2024

Featured in Physics Magazine, PRL Editor’s Suggestion

Predicting radiation-induced immune suppression in lung cancer patients treated with stereotactic body radiation therapy

J. Colen*, C. Nguyen*, S.W. Liyanage, E. Aliotta, J. Chen, C. Alonso, K. Romano, S. Peach, T. Showalter, P. Read, J. Larner, and K. Wijesooriya
Medical Physics, 2024

Motor crosslinking augments elasticity in active nematics

S.A. Redford, J. Colen, J.L. Shivers, S. Zemsky, M. Molaei, C. Floyd, P.V. Ruijgrok, V. Vitelli, Z. Bryant, A.R. Dinner, and M.L. Gardel
Soft Matter, 2024

Machine learning interpretable models of cell mechanics from protein images

M. Schmitt*, J. Colen*, S. Sala, J. Devany, S. Seetharaman, A. Caillier, M.L. Gardel, P.W. Oakes, and V. Vitelli
Cell, 2024

Twitter thread, courtesy of Patrick Oakes. Highlighted in Nature Methods

Negative group velocity and Kelvin-like wake pattern

E. Kolomeisky, J. Colen, and J.P. Straley
Physical Review B, 2022

PINT: A modern software package for pulsar timing

J. Luo, S. Ransom, P. Demorest, P.S. Ray, A. Archibald, M. Kerr, R.J. Jennings, M. Bachetti, R. van Haasteren, C.A. Champagne, J. Colen, C. Phillips, J. Zimmerman, K. Stovall, M.T. Lam, and F.A. Jenet
The Astrophysical Journal, 2021

Machine learning active-nematic hydrodynamics

J. Colen*, M. Han*, R. Zhang, S.A. Redford, L.M. Lenna, L. Morgan, P.V. Ruijgrok, R. Adkins, Z. Bryant, Z. Dogic, M.L. Gardel, J. J. de Pablo, and V. Vitelli
Proceedings of the National Academy of Sciences, 2021

Kelvin-Froude wake patterns of a traveling pressure disturbance

J. Colen and E. Kolomeisky
European Journal of Mechanics B/Fluids, 2021

PINT: High-precision pulsar timing analysis package

J. Luo, S. Random, P. Demorest, R. van Haasteren, P.S. Ray, K. Stovall, M. Bachetti, A. Archibald, M. Kerr, J. Colen, and F. Jenet
Astrophysics Source Code Library, 2019

Elastic and electronic tuning of magnetoresistance in MoTe₂

J. Yang, J. Colen, J. Liu, M.C. Nguyen, G.W. Chern, and D. Louca
Science Advances, 2017