Evaluation of radiomic feature harmonization techniques for benign and malignant pulmonary nodules
C. Huchthausen, M. Shi, G.L.A. de Sousa, J. Colen, E. Shelley, J. Larner, and K. Wijesooriya
In Revision at Medical Physics, 2024
Publications
You can also find my articles on my Google Scholar profile.
Journal Articles
Harnessing the Power of Gradient-Based Simulations for Multi-Objective Optimization in Particle Accelerators
K. Rajput, M. Schram, A. Edelen, J. Colen, A. Kasparian, R. Roussel, A. Carpenter, H. Zhang, and J. Benesch
In Review at Machine Learning: Science and Technology, 2024
Interpreting neural operators: how nonlinear waves propagate in non-reciprocal solids
J. Colen*, A. Poncet*, D. Bartolo, and V. Vitelli
Physical Review Letters, 2024
Featured in Physics Magazine, PRL Editor’s Suggestion
Predicting radiation-induced immune suppression in lung cancer patients treated with stereotactic body radiation therapy
J. Colen*, C. Nguyen*, S.W. Liyanage, E. Aliotta, J. Chen, C. Alonso, K. Romano, S. Peach, T. Showalter, P. Read, J. Larner, and K. Wijesooriya
Medical Physics, 2024
Motor crosslinking augments elasticity in active nematics
S.A. Redford, J. Colen, J.L. Shivers, S. Zemsky, M. Molaei, C. Floyd, P.V. Ruijgrok, V. Vitelli, Z. Bryant, A.R. Dinner, and M.L. Gardel
Soft Matter, 2024
Machine learning interpretable models of cell mechanics from protein images
M. Schmitt*, J. Colen*, S. Sala, J. Devany, S. Seetharaman, A. Caillier, M.L. Gardel, P.W. Oakes, and V. Vitelli
Cell, 2024
Twitter thread, courtesy of Patrick Oakes. Highlighted in Nature Methods
Sociohydrodynamics: data-driven modelling of social behavior
D. Seara, J. Colen, M. Fruchart, Y. Avni, D. Martin, and V. Vitelli
In Revision at PNAS, 2023
Learning a conserved mechanism for early neuroectoderm morphogenesis
M. Lefebvre*, J. Colen*, N. Claussen*, F. Brauns, M. Raich, N.P. Mitchell, M. Fruchart, V. Vitelli, and S. Streichan
In Revision at Developmental Cell, 2023
Featured in PreLights
Negative group velocity and Kelvin-like wake pattern
E. Kolomeisky, J. Colen, and J.P. Straley
Physical Review B, 2022
PINT: A modern software package for pulsar timing
J. Luo, S. Ransom, P. Demorest, P.S. Ray, A. Archibald, M. Kerr, R.J. Jennings, M. Bachetti, R. van Haasteren, C.A. Champagne, J. Colen, C. Phillips, J. Zimmerman, K. Stovall, M.T. Lam, and F.A. Jenet
The Astrophysical Journal, 2021
Machine learning active-nematic hydrodynamics
J. Colen*, M. Han*, R. Zhang, S.A. Redford, L.M. Lenna, L. Morgan, P.V. Ruijgrok, R. Adkins, Z. Bryant, Z. Dogic, M.L. Gardel, J. J. de Pablo, and V. Vitelli
Proceedings of the National Academy of Sciences, 2021
Kelvin-Froude wake patterns of a traveling pressure disturbance
J. Colen and E. Kolomeisky
European Journal of Mechanics B/Fluids, 2021
PINT: High-precision pulsar timing analysis package
J. Luo, S. Random, P. Demorest, R. van Haasteren, P.S. Ray, K. Stovall, M. Bachetti, A. Archibald, M. Kerr, J. Colen, and F. Jenet
Astrophysics Source Code Library, 2019
Elastic and electronic tuning of magnetoresistance in MoTe2
J. Yang, J. Colen, J. Liu, M.C. Nguyen, G.W. Chern, and D. Louca
Science Advances, 2017